Journal for novamente - Novamente work

Punt on remaining relex issues; I can parse a sentence at a time and tha'll do for now.

Build success, however, get 164 warning about template usage. For example:

    [javac] 164. WARNING in /home/linas/src/novamente/svn/open-relex/trunk/src/relex/util/socket/ProcessClient.java (at line 120)
    [javac]     public String process(String request, ArrayList restoreCommands) {
    [javac]                                           ^^^^^^^^^
    [javac] ArrayList is a raw type. References to generic type ArrayList should be parameterized

but these are just warnings.

Cleaning up the README, the various shell scripts. Murillo says the servers will be down all weekend for an office move.

Another crash:

 ./relex-engine.sh
   org.apache.uima.util.InvalidXMLException: Invalid descriptor at file:/home/linas/src/novamente/svn/open-relex/trunk/./data/descriptor/uima/comp/MiamiDadeCountyAggregate.xml.
   at org.apache.uima.util.impl.XMLParser_impl.parse(XMLParser_impl.java:189)
   at org.apache.uima.util.impl.XMLParser_impl.parseResourceSpecifier(XMLParser_impl.java:361)
   at org.apache.uima.util.impl.XMLParser_impl.parseResourceSpecifier(XMLParser_impl.java:342)
   at relex.uima.RelexEngine.(RelexEngine.java:78)
   at relex.uima.RelexEngine.main(RelexEngine.java:148)
Caused by: java.lang.NullPointerException

something wrong with the xml, but it doesn't say what/where.

downloaded gate-4.0

then java -jar gate-4.0-build2752-installer-other.jar just create a little blank window with "izPack - Installation of Gate" in the titlebar :-( and nothing happens ...

Downloading gate source now ...

OK, it needs to be in /opt/GATE-4.0 not /opt/gate-4.0

eclipse project file is thre, as .project in trunk directory. The project name is "trunk", not "open-relex" Duhh

Muriloq checked in new build.xml, errors now fewer. And changed .claspath .. excluding hgdb fixed most of the errors, which were in "/hgdb/core/src/java"

Playing with Eclipse. Mystery: building with eclipse gives "<Unable to parse as an Ant buildfile>"

but running ant on the command line works fine. Can't seem to get eclipse to be more verbose about what it did not like.

The build.xml file is autogened from eclipse, but the actual eclipse project files are not in svn, so I can't alter them. Need to ask muriloq tommorrow.

build-project:
     [echo] open-relex: /home/linas/src/novamente/svn/open-relex/trunk/build.xml
    [javac] Compiling 163 source files to /home/linas/src/novamente/svn/open-relex/trunk/bin
    [javac] ----------
    [javac] 1. WARNING in /home/linas/src/novamente/svn/open-relex/trunk/src/com/novamente/hg/RelationsLoader.java (at line 202)
    [javac]     HGSearchResult rs = null;
    [javac]     ^^^^^^^^^^^^^^
    [javac] HGSearchResult is a raw type. References to generic type HGSearchResult should be parameterized

etc. for 212 more errors:
    [javac] 212. WARNING in /home/linas/src/novamente/svn/open-relex/trunk/src/relex/util/socket/ProcessClient.java (at line 120)
    [javac]     public String process(String request, ArrayList restoreCommands) {
    [javac]                                           ^^^^^^^^^
    [javac] ArrayList is a raw type. References to generic type ArrayList should be parameterized
    [javac] ----------
    [javac] 212 problems (48 errors, 164 warnings)

BUILD FAILED
/home/linas/src/novamente/svn/open-relex/trunk/build.xml:48: Compile failed; see the compiler error output for details.

Code in svn, as currently documenteed in README, doesn't work:

./relation-extractor.sh
Exception in thread "main" java.lang.NoClassDefFoundError: relex.RelationExtractor
   at gnu.java.lang.MainThread.run(libgcj.so.81)
Caused by: java.lang.ClassNotFoundException: relex.RelationExtractor not found in gnu.gcj.runtime.SystemClassLoader{urls=[file:lib/jdom.jar,file:lib/wordnet/jwnl.jar,file:lib/wordnet/commons-logging.jar,file:lib/hgdb/hypergraphdb.jar,file:lib/hgdb/db.jar], parent=gnu.gcj.runtime.ExtensionClassLoader{urls=[], parent=null}}
   at java.net.URLClassLoader.findClass(libgcj.so.81)
   at gnu.gcj.runtime.SystemClassLoader.findClass(libgcj.so.81)
   at java.lang.ClassLoader.loadClass(libgcj.so.81)
   at java.lang.ClassLoader.loadClass(libgcj.so.81)
   at gnu.java.lang.MainThread.run(libgcj.so.81)

Am currently trying to fix this. So:

% ant
Unable to locate tools.jar. Expected to find it in /usr/lib/jvm/java-1.5.0-gcj-4.2-1.5.0.0/lib/tools.jar
Buildfile: build.xml

build-subprojects:

init:
    [mkdir] Created dir: /home/linas/src/novamente/svn/open-relex/trunk/bin
     [copy] Copying 241 files to /home/linas/src/novamente/svn/open-relex/trunk/bin

BUILD FAILED
/home/linas/src/novamente/svn/open-relex/trunk/build.xml:36: Failed to copy /home/linas/src/novamente/svn/open-relex/trunk/src/link-4.1b/.pc/utils.patch/include/utils.h to /home/linas/src/novamente/svn/open-relex/trunk/bin/link-4.1b/.pc/utils.patch/include/utils.h due to java.io.FileNotFoundException /home/linas/src/novamente/svn/open-relex/trunk/src/link-4.1b/.pc/utils.patch/include/utils.h (Permission denied)

Total time: 1 second